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1

A survey of matrix completion methods for recommendation systems

Ramlatchan, Andy, Yang, Mengyun, Liu, Quan, Li, Min, Wang, Jianxin, Li, Yaohang

Journal:

Big Data Mining and Analytics

Year:

2018

Language:

english

File:

PDF, 461 KB

english, 2018

2

Improving predicted protein loop structure ranking using a Pareto-optimality consensus method

Yaohang Li, Ionel Rata, See-wing Chiu, Eric Jakobsson

Journal:

BMC Structural Biology

Year:

2010

Language:

english

File:

PDF, 2.70 MB

english, 2010

3

DEMCMC-GPU: An Efficient Multi-Objective Optimization Method with GPU Acceleration on the Fermi Architecture

Weihang Zhu, Ashraf Yaseen, Yaohang Li

Journal:

New Generation Computing

Year:

2011

Language:

english

File:

PDF, 1.27 MB

english, 2011

4

Grid-based Quasi-Monte Carlo Applications

Li, Yaohang, Mascagni, Michael

Journal:

Monte Carlo Methods and Applications

Year:

2005

Language:

english

File:

PDF, 314 KB

english, 2005

5

Convergence Analysis of Markov Chain Monte Carlo Linear Solvers Using Ulam--von Neumann Algorithm

Ji, Hao, Mascagni, Michael, Li, Yaohang

Journal:

SIAM Journal on Numerical Analysis

Year:

2013

Language:

english

File:

PDF, 550 KB

english, 2013

6

A Quasi-Monte Carlo Method for Elliptic Boundary Value Problems

Mascagni, Michael, Karaivanova, Aneta, Li, Yaohang

Journal:

Monte Carlo Methods and Applications

Year:

2001

Language:

english

File:

PDF, 1.50 MB

english, 2001

7

ICOSA: A Distance-Dependent, Orientation-Specific Coarse-Grained Contact Potential for Protein Structure Modeling

Elhefnawy, Wessam, Chen, Lin, Han, Yun, Li, Yaohang

Journal:

Journal of Molecular Biology

Year:

2015

Language:

english

File:

PDF, 2.10 MB

english, 2015

8

[IEEE 2016 IEEE International Conferences on Big Data and Cloud Computing (BDCloud), Social Computing and Networking (SocialCom), Sustainable Computing and Communications (SustainCom) (BDCloud-SocialCom-SustainCom) - Atlanta, GA, USA (2016.10.8-2016.10.10)] 2016 IEEE International Conferences on Big Data and Cloud Computing (BDCloud), Social Computing and Networking (SocialCom), Sustainable Computing and Communications (SustainCom) (BDCloud-SocialCom-SustainCom) - What Differentiates News Articles with Short and Long Shelf Lives? A Case Study on News Articles at Bloomberg.com

Elhenfnawy, Wessam, Wright, Jesse, Kallepalli, Kumara, Racheal, Kevin, Gupta, Ajay, Parimi, Rohit, Shah, Parth, Li, Yaohang

Year:

2016

Language:

english

File:

PDF, 286 KB

english, 2016

9

Block Conjugate Gradient algorithms for least squares problems

Ji, Hao, Li, Yaohang

Journal:

Journal of Computational and Applied Mathematics

Year:

2017

Language:

english

File:

PDF, 1.15 MB

english, 2017

10

DeepFunc: A Deep Learning Framework for Accurate Prediction of Protein Functions from Protein Sequences and Interactions

Zhang, Fuhao, Song, Hong, Zeng, Min, Li, Yaohang, Kurgan, Lukasz, Li, Min

Journal:

Year:

2019

Language:

english

File:

PDF, 1.21 MB

english, 2019

11

Clinical big data and deep learning: Applications, challenges, and future outlooks

Yu, Ying, Li, Min, Liu, Liangliang, Li, Yaohang, Wang, Jianxin

Journal:

Big Data Mining and Analytics

Year:

2019

Language:

english

File:

PDF, 59 KB

english, 2019

12

Toxicity response of silkworm intestine to Bacillus cereus SW7-1 pathogen

Li, Guannan, Shi, Min, Zhao, Shan, Long, Yaohang, Zhu, Yong

Journal:

Science of The Total Environment

Year:

2019

Language:

english

File:

PDF, 2.18 MB

english, 2019

13

Feature and Nuclear Norm Minimization for Matrix Completion

Yang, Mengyun, li, yaohang, Wang, Jianxin

Journal:

IEEE Transactions on Knowledge and Data Engineering

Year:

2020

File:

PDF, 2.69 MB

2020

14

A decentralized parallel implementation for parallel tempering algorithm

Yaohang Li, Michael Mascagni, Andrey Gorin

Journal:

Parallel Computing

Year:

2009

Language:

english

File:

PDF, 458 KB

english, 2009

15

Hybrid parallel tempering and simulated annealing method

Yaohang Li, Vladimir A. Protopopescu, Nikita Arnold, Xinyu Zhang, Andrey Gorin

Journal:

Applied Mathematics and Computation

Year:

2009

Language:

english

File:

PDF, 1.48 MB

english, 2009

16

Accelerated simulated tempering

Yaohang Li, Vladimir A Protopopescu, Andrey Gorin

Journal:

Physics Letters A

Year:

2004

Language:

english

File:

PDF, 543 KB

english, 2004

17

Nonequilibrium, multiple-timescale simulations of ligand-receptor interactions in structured protein systems

Ying Zhang, Michael H. Peters, Yaohang Li

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2003

Language:

english

File:

PDF, 275 KB

english, 2003

18

Trustworthy remote compiling services for grid-based scientific applications

Yaohang Li, Daniel Chen, Xiaohong Yuan

Journal:

The Journal of Supercomputing

Year:

2007

Language:

english

File:

PDF, 375 KB

english, 2007

19

An adaptive and trustworthy software testing framework on the grid

Yaohang Li, Yong-Duan Song

Journal:

The Journal of Supercomputing

Year:

2008

Language:

english

File:

PDF, 388 KB

english, 2008

20

Accelerating knowledge-based energy evaluation in protein structure modeling with Graphics Processing Units

Ashraf Yaseen, Yaohang Li

Journal:

Journal of Parallel and Distributed Computing

Year:

2012

Language:

english

File:

PDF, 1.31 MB

english, 2012

21

[IEEE IEEE SoutheastCon, 2004. - Greensboro, North Carolina, USA ()] IEEE SoutheastCon, 2004. Proceedings. - Toward a Dynamic E-Commerce Automation with XML and Workflow Techniques on the Grid

Yaohang Li,, Qin Cai,, Yaoxiang Li,

Year:

2004

Language:

english

File:

PDF, 1.50 MB

english, 2004

22

MOMCMC: An efficient Monte Carlo method for multi-objective sampling over real parameter space

Journal:

Computers & Mathematics with Applications

Year:

2012

Language:

english

File:

PDF, 1.91 MB

english, 2012

23

High-dimensional MRI data analysis using a large-scale manifold learning approach

Tran, Loc, Banerjee, Debrup, Wang, Jihong, Kumar, Ashok J., McKenzie, Frederic, Li, Yaohang, Li, Jiang

Journal:

Machine Vision and Applications

Year:

2013

Language:

english

File:

PDF, 2.55 MB

english, 2013

24

Dinosolve: a protein disulfide bonding prediction server using context-based features to enhance prediction accuracy

Ashraf Yaseen,Yaohang Li

Journal:

BMC Bioinformatics

Year:

2013

Language:

english

File:

PDF, 1.85 MB

english, 2013

25

A Next Step in Protein Secondary Structure Prediction

Liu, Hui, Li, Yaohang, Rata, Ionel, Jakobsson, Eric

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 36 KB

english, 2012

26

Reusing Random Walks in Monte Carlo Methods for Linear Systems

Ji, Hao, Li, Yaohang

Journal:

Procedia Computer Science

Year:

2012

Language:

english

File:

PDF, 1.01 MB

english, 2012

27

CONFORMATIONAL SAMPLING IN TEMPLATE-FREE PROTEIN LOOP STRUCTURE MODELING: AN OVERVIEW

Journal:

Computational and Structural Biotechnology Journal

Year:

2013

Language:

english

File:

PDF, 3.30 MB

english, 2013

28

Context-Based Features Enhance Protein Secondary Structure Prediction Accuracy

Yaseen, Ashraf, Li, Yaohang

Journal:

Journal of Chemical Information and Modeling

Year:

2014

Language:

english

File:

PDF, 2.30 MB

english, 2014

29

Template-based C8-SCORPION: a protein 8-state secondary structure prediction method using structural information and context-based features

Ashraf Yaseen,Yaohang Li

Journal:

BMC Bioinformatics

Year:

2014

Language:

english

File:

PDF, 1.16 MB

english, 2014

30

[IEEE CCGrid 2003. 3rd IEEE/ACM International Symposium on Cluster Computing and the Grid, 2003. Proceedings. - Tokyo, Japan (2003.05.15-2003.05.15)] CCGrid 2003. 3rd IEEE/ACM International Symposium on Cluster Computing and the Grid, 2003. Proceedings. - Improving performance via computational replication on a large-scale computational grid

Yaohang Li,, Mascagni, M.

Year:

2003

File:

PDF, 727 KB

2003

31

Backbone Statistical Potential from Local Sequence-Structure Interactions in Protein Loops

Rata, Ionel A., Li, Yaohang, Jakobsson, Eric

Journal:

Journal of Physical Chemistry B

Year:

2010

Language:

english

File:

PDF, 4.87 MB

english, 2010

32

Sampling Multiple Scoring Functions Can Improve Protein Loop Structure Prediction Accuracy

Li, Yaohang, Rata, Ionel, Jakobsson, Eric

Journal:

Journal of Chemical Information and Modeling

Year:

2011

Language:

english

File:

PDF, 5.89 MB

english, 2011

33

Building a Knowledge-Based Statistical Potential by Capturing High-Order Inter-residue Interactions and its Applications in Protein Secondary Structure Assessment

Li, Yaohang, Liu, Hui, Rata, Ionel, Jakobsson, Eric

Journal:

Journal of Chemical Information and Modeling

Year:

2013

Language:

english

File:

PDF, 2.88 MB

english, 2013

34

[ACM Press the 45th annual southeast regional conference - Winston-Salem, North Carolina (2007.03.23-2007.03.24)] Proceedings of the 45th annual southeast regional conference on - ACM-SE 45 - Using packet sniffer simulator in the class

Yuan, Xiaohong, Vega, Percy, Xu, Jinsheng, Yu, Huiming, Li, Yaohang

Year:

2007

Language:

english

File:

PDF, 397 KB

english, 2007

35

[IEEE 2006 IEEE International Conference on Granular Computing - Atlanta, GA, USA (10-12 May 2006)] 2006 IEEE International Conference on Granular Computing - Large-scale software unit testing on the grid

Yaohang Li,, Tao Dong,, Xinyu Zhang,, Yong-duan Song,, Xiaohong Yuan,

Year:

2006

Language:

english

File:

PDF, 232 KB

english, 2006

36

NiTi layered double hydroxide thin films for advanced pseudocapacitor electrodes

Gu, Yaohang, Lu, Zhiyi, Chang, Zheng, Liu, Junfeng, Lei, Xiaodong, Li, Yaping, Sun, Xiaoming

Journal:

Journal of Materials Chemistry A

Year:

2013

Language:

english

File:

PDF, 1.05 MB

english, 2013

37

[IEEE amp; Distributed Processing (IPDPS) - Rome (2009.05.23-2009.05.29)] 2009 IEEE International Symposium on Parallel & Distributed Processing - Resource-efficient computing paradigm for computational protein modeling applications

Yaohang Li,, Wardell, D., Freeh, V.

Year:

2009

Language:

english

File:

PDF, 240 KB

english, 2009

38

[IEEE Distributed Processing, Workshops and Phd Forum (IPDPSW 2010) - Atlanta, GA (2010.04.19-2010.04.23)] 2010 IEEE International Symposium on Parallel & Distributed Processing, Workshops and Phd Forum (IPDPSW) - GPU-accelerated multi-scoring functions protein loop structure sampling

Yaohang Li,, Weihang Zhu,

Year:

2010

Language:

english

File:

PDF, 408 KB

english, 2010

39

[IEEE SOUTHEASTCON 2010 - Concord, NC, USA (2010.03.18-2010.03.21)] Proceedings of the IEEE SoutheastCon 2010 (SoutheastCon) - Sensor information framework: Using workflow to integrate distributed sensor services

Baber, Cheickna, Li, Yaohang

Year:

2010

Language:

english

File:

PDF, 1.43 MB

english, 2010

40

[IEEE CCGrid 2003. 3rd IEEE/ACM International Symposium on Cluster Computing and the Grid, 2003. Proceedings. - Tokyo, Japan (2003.05.15-2003.05.15)] CCGrid 2003. 3rd IEEE/ACM International Symposium on Cluster Computing and the Grid, 2003. Proceedings. - Grid-based nonequilibrium multiple-time scale molecular dynamics/Brownian dynamics simulations of ligand-receptor interactions in structured protein systems

Yaohang Li,, Mascagni, M., Peters, M.H.

Year:

2003

File:

PDF, 676 KB

2003

41

[IEEE 2010 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB) - Montreal, QC, Canada (2010.05.2-2010.05.5)] 2010 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology - Integrating multiple scoring functions to improve protein loop structure conformation space sampling

Li, Yaohang, Rata, Ionel, Jakobsson, Eric

Year:

2010

Language:

english

File:

PDF, 624 KB

english, 2010

42

[IEEE 2013 IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences (ICCABS) - New Orleans, LA (2013.6.12-2013.6.14)] 2013 IEEE 3rd International Conference on Computational Advances in Bio and medical Sciences (ICCABS) - Template-based prediction of protein 8-state secondary structures

Yaseen, Ashraf, Yaohang Li,

Year:

2013

Language:

english

File:

PDF, 164 KB

english, 2013

43

[IEEE 2013 IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences (ICCABS) - New Orleans, LA (2013.6.12-2013.6.14)] 2013 IEEE 3rd International Conference on Computational Advances in Bio and medical Sciences (ICCABS) - An improved statistics-based backbone torsion potential energy for protein loop structure modeling

Rata, Ionel, Wessells, Kyle, Yaohang Li,

Year:

2013

Language:

english

File:

PDF, 643 KB

english, 2013

44

[IEEE 2014 Hardware-Software Co-Design for High Performance Computing (Co-HPC) - New Orleans, LA, USA (2014.11.17-2014.11.17)] 2014 Hardware-Software Co-Design for High Performance Computing - An Implementation of Block Conjugate Gradient Algorithm on CPU-GPU Processors

Ji, Hao, Sosonkina, Masha, Li, Yaohang

Year:

2014

Language:

english

File:

PDF, 1.31 MB

english, 2014

45

A New ArylalkylamineN-Acetyltransferase in Silkworm (Bombyx mori) Affects Integument Pigmentation

Long, Yaohang, Li, Jiaorong, Zhao, Tianfu, Li, Guannan, Zhu, Yong

Journal:

Applied Biochemistry and Biotechnology

Year:

2015

Language:

english

File:

PDF, 1.16 MB

english, 2015

46

[ACM Press Proceeding of the 2nd workshop - Washington, DC, USA (2010.06.11-2010.06.11)] Proceeding of the 2nd workshop on Bio-inspired algorithms for distributed systems - BADS '10 - GPU-accelerated differential evolutionary Markov Chain Monte Carlo method for multi-objective optimization over continuous space

Zhu, Weihang, Li, Yaohang

Year:

2010

Language:

english

File:

PDF, 1.10 MB

english, 2010

47

[Lecture Notes in Computer Science] Bioinformatics Research and Applications Volume 9096 ||

Harrison, Robert, Li, Yaohang, Măndoiu, Ion

Year:

2015

Language:

english

File:

PDF, 27.88 MB

english, 2015

48

[Lecture Notes in Computer Science] Bioinformatics Research and Applications Volume 9096 || Structural Comparative Analysis of Ecto- NTPDase Models from S. Mansoni and H. Sapiens

Harrison, Robert, Li, Yaohang, Măndoiu, Ion

Year:

2015

Language:

english

File:

PDF, 8.79 MB

english, 2015

49

[Lecture Notes in Computer Science] Bioinformatics Research and Applications Volume 9096 || Community Detection-Based Feature Construction for Protein Sequence Classification

Harrison, Robert, Li, Yaohang, Măndoiu, Ion

Year:

2015

Language:

english

File:

PDF, 212 KB

english, 2015

50

Grid-based Quasi-Monte Carlo Applications

Li, Yaohang, Mascagni, Michael

Journal:

Monte Carlo Methods and Applications

Year:

2005

Language:

english

File:

PDF, 335 KB

english, 2005

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